My 08 with 2.0 upgrade does something similar in the morning, but it did it before the 2.0 upgrade as well. When first starting out after backing out of the garage, the car doesn't want to shift from 1 - 2 even though I drive in manual mode. I don't know if it's a time thing or getting up to speed thing, but it won't respond to the up-shift paddle for a little bit. Then, it acts normally. Instead of hitting the paddle 2 or 3 times, I just keep it in 1st until the point where it normally lets me shift into 2 and then call for the up-shift and there is no hesitation.
I am also descending a slight grade, so maybe it's grade logic thing? My '07 Civic would do something similar with its automatic - holding a gear going down a slight grade and even if you accelerated, it wouldn't up-shift for a little bit, just revved up the engine while holding the same gear.
Not a big deal for me, just another bit of character. But, I could see it being annoying for those of you in traffic.